Installation

Installation

Requirements before installing:

• Miniconda

• Guppy == 6.5.7 (https://community.nanoporetech.com/downloads)

First clone the pipeline into a chosen directory:

git clone https://github.com/WFSRDataScience/PIMENTA.git

To use PIMENTA, first install by running the install script:

cd pimenta
bash install.sh

This creates a new conda environment called “pimenta” with all dependencies, except Guppy.